How to do standard MD analysis
From Computational Biophysics and Materials Science Group
Revision as of 13:42, 3 October 2015 by Kevin (Talk | contribs) (Created page with "This is just how I do mine and I found it quite cost-effective and most importantly easy to trace. I am more happy to discuss on any better protocols. --~~~~ * Cat trajectory...")
This is just how I do mine and I found it quite cost-effective and most importantly easy to trace. I am more happy to discuss on any better protocols. --Kevin (talk) 13:42, 3 October 2015 (CST)
- Cat trajectory to a protein/protein+membrane-only system
- Make a pdb out from the initial structure
- Calculate RMSD to see convergence of the simulation
