Difference between revisions of "Progress:Kevin"
From Computational Biophysics and Materials Science Group
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# <span style="color: red">Summarize BAR-PH simulations | # <span style="color: red">Summarize BAR-PH simulations | ||
#* Sun: compare stability of tetramers | #* Sun: compare stability of tetramers | ||
| + | #* Sun: to be discussed for the manuscript | ||
# <span style="color: grey">Prepare Ups figures | # <span style="color: grey">Prepare Ups figures | ||
=20160720= | =20160720= | ||
| − | # Ups | + | # Ups figure |
#* <span style="color: grey">read manuscript | #* <span style="color: grey">read manuscript | ||
#* <span style="color: grey">examine contacting residues | #* <span style="color: grey">examine contacting residues | ||
| − | #* <span style="color: | + | #* <span style="color: grey">discuss |
# Next BAR-PH paper | # Next BAR-PH paper | ||
| − | #* <span style="color: | + | #* <span style="color: grey">examine contacting residues |
| − | #* <span style="color: red"> | + | #* <span style="color: grey">discuss |
| + | |||
| + | =20160727= | ||
| + | # <span style="color: red">US of BN-lipids | ||
| + | #* help Yonghui setting up US in Gromacs, 2 set-ups (BN and membrane), DMPC, 3 temperatures | ||
| + | # <span style="color: red">Ups figure | ||
| + | #* COM between protein and lipids | ||
| + | #* tilting angles | ||
| + | #* distance between residues (<10) and DOPA (resid 257) | ||
| + | #* vector of binding pocket with membrane | ||
| + | # Next BAR-PH paper | ||
| + | #* Theme: lipid specificity | ||
| + | #* <span style="color: red">contacting residues in BAR-PH--membrane MD | ||
| + | #* <span style="color: red">Setup US of PIP2/PS with PH domain | ||
| + | #* <span style="color: red">read James' paper | ||
| + | # Martini | ||
| + | #* <span style="color: red">many constrained BAR-PH on membrane | ||
| + | # Actin | ||
| + | #* <span style="color: red">new MD data | ||
| + | # Others | ||
| + | #* <span style="color: red">Send cluster configurations to CSC | ||
| + | #* <span style="color: red">Move mini | ||
| + | #* <span style="color: red">Quotation for new storage disks | ||
Revision as of 14:22, 20 July 2016
This page is used for checklists discussed during the weekly meetings.
Checked
To be checked
In progress
Contents
[hide]20160706
- Revision on supplementary text and legends
- colour definitions added to legends
- comparison between before and after MDFF added
- comparison between MDFF and rigid-body docking added
- Figure indexes
- revised
- Figure “rotational PH” revised
- split into main and supp
- re-plot distribution and delete class 2
- re-draw schematic
- add bin size
- Figure "assembly process" revised
- revised and polished
- move legends
- Figure “structural angle”
- re-plot to distribution
- PTMC
- PTMC of BAR-PH added to Fig1
- PTMC of other BAR added to Supp
- tables modified
- add two supp figures
- add supp text on other BARs
- Check residues
- Text name of interfaces: same-row, different-row, front, back interactions
20160713
- Summarize BAR-PH simulations
- Sun: compare stability of tetramers
- Sun: to be discussed for the manuscript
- Prepare Ups figures
20160720
- Ups figure
- read manuscript
- examine contacting residues
- discuss
- Next BAR-PH paper
- examine contacting residues
- discuss
20160727
- US of BN-lipids
- help Yonghui setting up US in Gromacs, 2 set-ups (BN and membrane), DMPC, 3 temperatures
- Ups figure
- COM between protein and lipids
- tilting angles
- distance between residues (<10) and DOPA (resid 257)
- vector of binding pocket with membrane
- Next BAR-PH paper
- Theme: lipid specificity
- contacting residues in BAR-PH--membrane MD
- Setup US of PIP2/PS with PH domain
- read James' paper
- Martini
- many constrained BAR-PH on membrane
- Actin
- new MD data
- Others
- Send cluster configurations to CSC
- Move mini
- Quotation for new storage disks
