Revision as of 11:17, 17 August 2016

This page is used for checklists discussed during the weekly meetings.

Checked
To be discussed
In progress

20160817

US of BN-lipids
- help Yonghui setting up US in Gromacs, 2 set-ups (BN and membrane), DMPC, 3 temperatures
Ups figure
- COM between protein and lipids
- tilting angles
- distance between residues (<10) and DOPA (resid 257)
- vector of binding pocket with membrane
Next BAR-PH paper
- Theme: lipid specificity
- contacting residues in BAR-PH--membrane MD
- Setup US of PIP2/PS with PH domain
Martini
- many constrained BAR-PH on membrane
Actin
- new MD data
Others
- Send cluster configurations to CSC
- Move mini
- Quotation for new storage disks

Summarize BAR-PH simulations
- Sun: compare stability of tetramers
- Sun: to be discussed for the manuscript
Prepare Ups figures

Revision on supplementary text and legends
- colour definitions added to legends
- comparison between before and after MDFF added
- comparison between MDFF and rigid-body docking added
Figure indexes
- revised
Figure “rotational PH” revised
- split into main and supp
- re-plot distribution and delete class 2
- re-draw schematic
- add bin size
Figure "assembly process" revised
- revised and polished
- move legends
Figure “structural angle”
- re-plot to distribution
PTMC
- PTMC of BAR-PH added to Fig1
- PTMC of other BAR added to Supp
- tables modified
- add two supp figures
- add supp text on other BARs
Check residues
Text name of interfaces: same-row, different-row, front, back interactions

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 To be discussed<br />
 <span style="color: red">In progress<br />
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+# <span style="color: red">Actin analysis
+# <span style="color: red">Peptide setup
 =20160727=